2014

Zuchelli, M., E. Garyfallidis, M. Paquette, S. Merlet, G. Menegaz, and M. Descoteaux. "Comparison between discrete and continuous propagator indices from Cartesian q-space DSI sampling." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). 6762, 2014. (Abstract)

St-Jean, S., P. Coupé, and M. Descoteaux. "Non Local Spatial and Angular Matching : a new denoising technique for diffusion MRI." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). 758, 2014.

Paquette, M., S. Merlet, R. Deriche, and M. Descoteaux. "DSI 101: Better ODFs for free!" Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). 7018, 2014. (Abstract)

Paquette, M., S. Merlet, G. Gilbert, R. Deriche, and M. Descoteaux. "A comparison of sampling strategies and sparsifying transforms to improve Compressed Sensing DSI." Magnetic Resonance in Medicine, in press, 2014. URL

Garyfallidis, E., A. Rokem, B. Amirbekian, S. van der Walt, M. Zucchelli, J-O. Ocegueda-Gonzalez, S. St-Jean, G. Girard, M. Paquette, I. Nimmo-Smith, M. Brett, and M. Descoteaux. "The new methods available in Dipy 0.7.0+ that you should know about." Proceeding of: Organization of Human Brain Mapping (OHBM). Hamburg, Germany, 2014. (Abstract)

Garyfallidis, E., M. Zuchelli, J-C. Houde, and M. Descoteaux. "How to perform best ODF reconstruction from the Human Connectome Project sampling scheme?" Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Milan, Italy. 6838, 2014. (Abstract)

Garyfallidis, E., D. Wassermann, and M. Descoteaux. "Direct native-space fiber bundle alignment for group comparisons." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Milan, Italy. 7796, 2014. (Abstract)

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. "Dipy, a library for the analysis of diffusion MRI data." Frontiers in Neuroinformatics, 1-18, 2014. URL

D. De Nigris, D. L. Collins and T. Arbel,  "SymBA: Diffeomorphic Registration Based on Gradient Orientation Alignment and Boundary Proximity of Sparsely Selected Voxels", in Proceedings of the 6th International Workshop on Biomedical Image Registration (WBIR), Springer Vol. 8545, University College London, U.K., July 2014. (oral presentation), pp. 21-30. 

Daducci  A., E. Canales-Rodriguez, M. Descoteaux, E. Garyfallidis, Y. Gur, Y-C. Lin, M. Mani, S. Merlet, M. Paquette, A. Ramirez-Manzanares, M. Reisert, P. Rodrigues, F. Sepehrband, E. Caruyer, J. Choupan, R. Deriche, M. Jacob, G. Menegaz, V. Prckovska, M. Rivera, Y. Wiaux, and J-P. Thiran. "Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI." Transactions in Medical Imaging, 33 (2): 384-399, 2014. URL

Boucetta S., Salimi A., Dadar M., … & Dang-Vu T. T., (2014), “Brain Structural Abnormalities associated with Rapid Eye Movement Sleep Behaviour Disorder in Parkinson’s disease”, European Sleep Research Society.

Gueziri H.E., McGuffin M. J., Laporte C.  Visualizing positional uncertainty in freehand 3D ultrasound. Proc. SPIE 9036, Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions, and Modeling, 90361H (March 2014). Doi:10.1117/12.2043659

Ghaderi H., Alsubaie, F., Sadikot, A.F., and Pike G.B. Functional target localization for neurosurgery: task-based fMRI (tb-fMRI) versus resting state fMRI (rs-fMRI), International Society for Magnetic Resonance in Medicine (ISMRM) Brain function Workshop, Whistler, British Columbia, Canada, March 2014.

Ghaderi H., Sadikot A.F.,  Pike G.B.,  Functional target localization for neurosurgery: task-based fMRI versus resting state fMRI study,  International Society for Magnetic Resonance in Medicine (ISMRM) Proceeding 2014, Abstract Number: 3896, Milan, Italy

Ghaderi H., Xiao Y., Sadikot A.F., Collins D.L., Pike G.B., Multi-contrast unbiased non-linear brain atlas of Parkinson’s disease patients, International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2014) proceeding -- Deep Brain Stimulation Methodological Challenges - 2nd Edition. Boston, USA

Mensch A., Piuze E., Lehnert L., Bakermans A. J., Sporring J., Strijkers G. J., Siddiqi K., Connection Forms for beating the heart. MICCAI workshop/STACCOM. 2014.

Paquette, M., G. Sanguinetti, S. St-Jean, E. Garyfallidis and M. Descoteaux, “Cartesian 3D-SHORE with Laplacian Regularization”. Proceeding of : MICCAI Computational Diffusion MRI workshop challenge (CDMRI'14), 2014.

Sabouni A.,  Ghaderi H., High Resolution Near Field Arrays for Non-Invasive Brain Activity Mapping, IEEE EMBS BRAIN Grand Challenges Conference, 2014, Washington DC, USA.

St-Jean S., M. Paquette, E. Garyfallidis and M. Descoteaux, Spherical Deconvolution on single shell and multishell combined with denoising. Proceeding of : MICCAI Computational Diffusion MRI workshop challenge (CDMRI'14), 2014.

Sarraf S., Saverino C., Ghaderi H.,  Anderson J., "Brain network extraction from probabilistic ICA using functional Magnetic Resonance Images and advanced template matching techniques”,  Electrical and Computer Engineering (CCECE), IEEE 27th Canadian Conference, Toronto, Ontario, Canada DOI:10.1109/CCECE.2014.6901003 Conference

Zandifar, A., Fonov, V., Coupé, P., Pruessner, J.C. and Collins, D.L., 2014. A unified assessment of fully automated hippocampus segmentation methods. Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 10(4), p.P86. – presented in AAIC Copenhagen.

Bakhtiari S., Natural versus Unnatural Stimulation of the Early Visual System. CREATE-MIA Summer School, May, 2014. (Oral presentation).

Dadar M., Detecting White Matter Hyperintensities using Markov Random Fields. CREATE-MIA Summer School, May, 2014. (Oral presentation).

Dahmani J., Characterization and compensation of image deformations arising from the variation of probe pressure on the skin in 3D ultrasound. CREATE-MIA Summer School, May, 2014. (Oral presentation).

Donnelly C., Learning feature-based matching for image registration. CREATE-MIA Summer School, May, 2014. (Oral presentation).

Garyfallidis E., Diffusion MRI workshop, University of Verona, Italy. (May 2014)

Garyfallidis E., Hack the white matter with Dipy, Ignite speaker in Brainhack EDT (brainhack.org), Univeristy of Montreal, Canada.

Ghaderi H., Pre-operative planning in image guided surgery of deep brain structures. CREATE-MIA Summer School, May, 2014. (Oral Presentation).

Gueziri H.E., Visualizing positional uncertainty in freehand 3D ultrasound. CREATE-MIA Summer School, May, 2014. (Oral presentation).

Ghaderi H., DBS methodology and challenges. University of Tehran Graduate Research Day, Tehran, Iran, Invited speaker

Movaghati S., Spatio-temporal dynamics of the cerebral cortex’ processing of visual objects. Department of Biomedical Engineering Seminar, McGill University, April 2014. (Oral presentation).

Movaghati S., Spectrotemporal analysis of the visual cortex response to natural images and their phase-shuffled versions. CREATE-MIA Summer School, May, 2014. (Oral presentation).

Piuze E., Restoration of Fragmentary Cardiac Diffusion Volumes. CREATE-MIA Summer School, May, 2014. (Oral presentation).

Piuze E., Samari B., Zaltzhendler M., Technical orientation (coding practice, code versioning, hackathon setup), CREATE-MIA 2014 Summer School Hackathon (oral presentation).

St-Jean S., Non Local Spatial and Angular Matching: a new denoising technique for diffusion MRI. CREATE-MIA Summer School, May, 2014. (Oral presentation).

St-Jean S., Non Local Spatial and Angular Matching: a new denoising technique for diffusion MRI. University of Toronto, September, 2014. (Invited speaker).

St-Onge E., Introduction to Brain Tractography. CREATE-MIA Summer School, May, 2014. (Oral presentation).

Samari B., Dynamic 3D Facial Expression Capture and Analysis. CREATE-MIA Summer School, May, 2014. (Oral presentation).

Yao Z.. Monte Carlo simulation of light propagation in heterogenous media and filling of the missing data in a 2D image. CREATE-MIA Summer School, May, 2014. (Oral presentation).

Zandifar A., A unified assessment of fully automated hippocampus segmentation methods. CREATE-MIA Summer School, May, 2014. (Oral presentation).